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Preheat the oven to 400 degrees.
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Cut the squash in half lengthwise, scoop out the seeds and cut the squash into ½-inch chunks. In a large bowl, combine the squash, mushrooms, thyme, 2 tablespoons of the coconut oil (melted) and salt. Toss well.
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Spread squash and mushrooms on a baking sheet in a single layer without crowding. Roast for approximately 20 minutes, until squash is tender. Reduce oven temperature to 375 degrees.
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In large sauté pan, heat 1 tablespoon of coconut oil, add onions and sauté until they are translucent. Add mushroom broth, red wine, sherry, pepper and roasted squash and mushrooms to the onions and bring to a boil. Lower heat and simmer for about 30 minutes, until mixture has been reduced and squash breaks down slightly to thicken the ragout.
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Heat a large pot of water to boiling. Add green beans and blanch for 4 minutes. Drain green beans well and place in a 9X13 inch baking dish. Note: if you like crunchier green beans skip this step.
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Pour mushroom and onion mixture over the green beans and mix gently. Toss bread crumbs, shallots, and 1 tablespoon of melted coconut oil together. Spread shallots and bread crumbs evenly over the green beans.
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Bake for 25-30 minutes, until bread crumbs and shallots are golden brown.