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Preheat the oven to 400 degrees.
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Cut the squash in half lengthwise, scoop out the seeds and cut the squash into ½-inch chunks.
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In a large bowl, combine the squash, mushrooms, thyme, 2 tablespoons of the coconut oil and salt. Toss well.
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Spread mushroom and squash mixture on a baking sheet in a single layer without crowding. Roast for approximately 20 minutes, until squash is tender.
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In large sauté pan, heat 1 tablespoon of coconut oil, add onions and sauté until they are translucent. Add mushroom broth, red wine and sherry to the onions and bring to a boil. Lower heat and simmer for about 20 minutes, until mixture has been reduced to about half of the original volume.
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Prepare the pasta (pasta should be al dente - do not overcook or it will quickly become mushy).
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Add the roasted vegetables to the onion and broth mixture and simmer for another 5 minutes. Ladle stroganoff over noodles and serve immediately.